Stem-loop pte-mir-71-1

Accession

MI0038092

Description

Parasteatoda tepidariorum pte-mir-71-1 precursor miRNA

Literature search

2 open access papers mention pte-mir-71-1
(14 sentences)

Sequence

UGAAAGACAUGGGUAGUGAGAUGucuuaauuccccaUCUCACUACCUUGUCUUUGACG
..(((((((.(((((((((((((...........))))))))))))))))))))....

Structure

--UG       U             ucuu 
    AAAGACA GGGUAGUGAGAUG    a
    ||||||| |||||||||||||    a
    UUUCUGU UCCAUCACUCUac    u
GCAG       -             cccu 

Annotation confidence Not enough data

Genome context

Scf5bK3_5995: 356520-356577 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from pte-mir-71-1

Mature pte-miR-71-5p

• Accession: MIMAT0046219
• Description: Parasteatoda tepidariorum pte-miR-71-5p mature miRNA
• Sequence: 1 - UGAAAGACAUGGGUAGUGAGAUG - 23
• Evidence: experimental ; Illumina [1]

Mature pte-miR-71-3p

• Accession: MIMAT0046220
• Description: Parasteatoda tepidariorum pte-miR-71-3p mature miRNA
• Sequence: 37 - UCUCACUACCUUGUCUUUGACG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144