Stem-loop pte-mir-11952

Accession

MI0038128

Description

Parasteatoda tepidariorum pte-mir-11952 precursor miRNA

Sequence

2926 reads, 197.0 reads per million, 10 experiments

GCAAUAUCGGGUUUGAACGCUGCUugcuagauaaguguguAACGUUAACACCGAUAUUGCCC
(((((((((((((..((((.(((..(((.....)))..))).))))))).))))))))))..

Structure

--          -   UG    C   Uu   a 
  GCAAUAUCGG GUU  AACG UGC  gcu g
  |||||||||| |||  |||| |||  ||| a
  CGUUAUAGCC CAA  UUGC Aug  uga u
CC          A   --    A   ug   a 

Annotation confidence High

Genome context

Scf5bK3_230: 1499973-1500034 [+]

Mature pte-miR-11952-5p

• Accession: MIMAT0046284
• Description: Parasteatoda tepidariorum pte-miR-11952-5p mature miRNA
• Sequence: 1 - GCAAUAUCGGGUUUGAACGCUGCU - 24
• Evidence: experimental ; Illumina [1]

Mature pte-miR-11952-3p

• Accession: MIMAT0046285
• Description: Parasteatoda tepidariorum pte-miR-11952-3p mature miRNA
• Sequence: 41 - AACGUUAACACCGAUAUUGCCC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144