Stem-loop xla-let-7c

Accession

MI0038221

Description

Xenopus laevis xla-let-7c precursor miRNA

Literature search

7 open access papers mention xla-let-7c
(8 sentences)

Sequence

120156 reads, 2952.0 reads per million, 18 experiments

UGAGGUAGUAGGUUGUAUGGUUuagaaugacacccugggaGUUAACUGUACAACCUUCUAGCuuucc
.(((.(((.(((((((((((((...(((..(......)..)))))))))))))))).))).)))...

Structure

--U   G   U             uag   ga ac 
   GAG UAG AGGUUGUAUGGUU   aau  c  c
   ||| ||| |||||||||||||   |||  |   
   uuC AUC UCCAACAUGUCAA   UUG  g  c
ccu   G   U             ---   ag gu 

Annotation confidence Medium

Genome context

chr2S: 9125193-9125259 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-let-7c

Mature xla-let-7c-5p

• Accession: MIMAT0046399
• Description: Xenopus laevis xla-let-7c-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature xla-let-7c-3p

• Accession: MIMAT0046400
• Description: Xenopus laevis xla-let-7c-3p mature miRNA
• Sequence: 41 - GUUAACUGUACAACCUUCUAGC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38