Stem-loop xla-let-7f

Accession

MI0038223

Description

Xenopus laevis xla-let-7f precursor miRNA

Literature search

2 open access papers mention xla-let-7f
(2 sentences)

Sequence

UGAGGUAGUAGAUUGUAUAGUUuuggggucacacccgaucugggagauaaCUAUACAGUUUACUGUCUUUCC
.((((((((((((((((((((((((((......)))))..........)))))))))))))))))))))...

Structure

--U                     ----------     gu 
   GAGGUAGUAGAUUGUAUAGUU          uuggg  c
   |||||||||||||||||||||          |||||   
   UUCUGUCAUUUGACAUAUCaa          agccc  a
CCU                     uagagggucu     ac 

Annotation confidence Low

Genome context

chr8S: 36774930-36775001 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-let-7f

Mature xla-let-7f-5p

• Accession: MIMAT0046403
• Description: Xenopus laevis xla-let-7f-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGAUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature xla-let-7f-3p

• Accession: MIMAT0046404
• Description: Xenopus laevis xla-let-7f-3p mature miRNA
• Sequence: 51 - CUAUACAGUUUACUGUCUUUCC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38