Stem-loop xla-mir-100-1

Accession

MI0038227

Description

Xenopus laevis xla-mir-100-1 precursor miRNA

Literature search

2 open access papers mention xla-mir-100-1
(7 sentences)

Sequence

1987340 reads, 49958.0 reads per million, 18 experiments

AACCCGUAGAUCCGAACUUGUGcugugccccucucaCAAGCUCGAGUGUGCGGGUCUGugucggcuugg
...(((((((((((.(((((.((((((.......))).))).)))))...))))))))...))).....

Structure

--AAC   ---        --A     U   -   cc 
     CCG   UAGAUCCG   ACUUG Gcu gug  c
     |||   ||||||||   ||||| ||| |||  c
     ggc   GUCUGGGC   UGAGC CGA Cac  u
gguuc   ugu        GUG     U   A   uc 

Annotation confidence Medium

Genome context

chr7L: 113015055-113015123 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-100-1

Mature xla-miR-100-5p

• Accession: MIMAT0046409
• Description: Xenopus laevis xla-miR-100-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAACUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature xla-miR-100-3p

• Accession: MIMAT0046411
• Description: Xenopus laevis xla-miR-100-3p mature miRNA
• Sequence: 37 - CAAGCUCGAGUGUGCGGGUCUG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38