miRBase entry: xla-mir-130a

Stem-loop xla-mir-130a

Accession

MI0038244

Description

Xenopus laevis xla-mir-130a precursor miRNA

Sequence

UGCCCUUUUUAUGUUGUACUACUaguggucacacacaaaaaaagCAGUGCAAUGUUAAAAGGGCAUU
(((((((((.((((((((((.((.(((......)))......)).)))))))))).)))))))))..

Structure

--         U          A  -----a   gu 
  UGCCCUUUU AUGUUGUACU CU      gug  c
  ||||||||| |||||||||| ||      |||   
  ACGGGAAAA UGUAACGUGA ga      cac  a
UU         U          C  aaaaaa   ac

Annotation confidence Not enough data

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Genome context

chr2L: 78128936-78129002 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-130a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xla-miR-130a-5p

Accession	MIMAT0046441
Description	Xenopus laevis xla-miR-130a-5p mature miRNA
Sequence	1 - UGCCCUUUUUAUGUUGUACUACU - 23
Evidence	experimental Illumina [1]

Mature xla-miR-130a-3p

Accession	MIMAT0046442
Description	Xenopus laevis xla-miR-130a-3p mature miRNA
Sequence	45 - CAGUGCAAUGUUAAAAGGGCAUU - 67
Evidence	experimental Illumina [1]

References

PubMed ID: 26548531
Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
"Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
"Dev Biol (2016) 409:26-38