Stem-loop xla-mir-145

Accession

MI0038256

Description

Xenopus laevis xla-mir-145 precursor miRNA

Literature search

6 open access papers mention xla-mir-145
(8 sentences)

Sequence

20735 reads, 785.0 reads per million, 13 experiments

caguuuucccaggaauccCUUGGGUGCUGUGGUGGGGAUUCCUGGAAAUACUGUUCU
((((.((.((((((((((((.............)))))))))))).)).))))....

Structure

----    u  c            UGGGU 
    cagu uu ccaggaauccCU     G
    |||| || ||||||||||||     C
    GUCA AA GGUCCUUAGGGG     U
UCUU    U  A            UGGUG 

Annotation confidence Medium

Genome context

chr3L: 26673145-26673201 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-145

Mature xla-miR-145-5p

• Accession: MIMAT0046460
• Description: Xenopus laevis xla-miR-145-5p mature miRNA
• Sequence: 19 - CUUGGGUGCUGUGGUGGGG - 37
• Evidence: experimental ; Illumina [1]

Mature xla-miR-145-3p

• Accession: MIMAT0046461
• Description: Xenopus laevis xla-miR-145-3p mature miRNA
• Sequence: 36 - GGAUUCCUGGAAAUACUGUUCU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38