Stem-loop xla-mir-15b-1

Accession

MI0038262

Description

Xenopus laevis xla-mir-15b-1 precursor miRNA

Literature search

4 open access papers mention xla-mir-15b-1
(4 sentences)

Sequence

15287 reads, 596.0 reads per million, 18 experiments

UAGCAGCACAUCAUGAUUUGCaugcuguauuagauuCUAAUCAUUAUUUGCUGCUUCA
.(((((((.((.((((((.(.(..(((...)))..)).)))))).)).)))))))...

Structure

--U       C  C      U C ug   u 
   AGCAGCA AU AUGAUU G a  cug  
   ||||||| || |||||| | |  ||| a
   UCGUCGU UA UACUAA C u  gau  
ACU       U  U      U - ua   u 

Annotation confidence High

Genome context

chr5S: 96781648-96781705 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-15b-1

Mature xla-miR-15b-5p

• Accession: MIMAT0046472
• Description: Xenopus laevis xla-miR-15b-5p mature miRNA
• Sequence: 1 - UAGCAGCACAUCAUGAUUUGC - 21
• Evidence: experimental ; Illumina [1]

Mature xla-miR-15b-3p

• Accession: MIMAT0046473
• Description: Xenopus laevis xla-miR-15b-3p mature miRNA
• Sequence: 37 - CUAAUCAUUAUUUGCUGCUUCA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38