Stem-loop xla-mir-16c-1

Accession

MI0038266

Description

Xenopus laevis xla-mir-16c-1 precursor miRNA

Literature search

2 open access papers mention xla-mir-16c-1
(10 sentences)

Sequence

239428 reads, 5770.0 reads per million, 18 experiments

UAGCAGCACGUAAAUACUGGAGuucaucaccauaucugcacucuCCAGUAUUACUUUGCUGCUAUA
((((((((.((((.((((((((....................))))))))))))..))))))))..

Structure

--        -C    A        uucaucacc 
  UAGCAGCA  GUAA UACUGGAG         a
  ||||||||  |||| ||||||||          
  AUCGUCGU  CAUU AUGACCuc         u
AU        UU    -        ucacgucua 

Annotation confidence High

Genome context

chr8S: 74386415-74386480 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-16c-1

Mature xla-miR-16c-5p

• Accession: MIMAT0046480
• Description: Xenopus laevis xla-miR-16c-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUACUGGAG - 22
• Evidence: experimental ; Illumina [1]

Mature xla-miR-16c-3p

• Accession: MIMAT0046481
• Description: Xenopus laevis xla-miR-16c-3p mature miRNA
• Sequence: 45 - CCAGUAUUACUUUGCUGCUAUA - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38