Stem-loop xla-mir-182-1

Accession

MI0038272

Description

Xenopus laevis xla-mir-182-1 precursor miRNA

Literature search

1 open access papers mention xla-mir-182-1
(129 sentences)

Sequence

UUUGGCAAUGGUAGAACUCACACuggugagcuauguagauccgGUGGUUCUAGACUUGCCAACUa
.(((((((...((((((...((((((....((....))..))))))))))))...)))))))...

Structure

--U       UGG      UCA      ugag  a 
   UUGGCAA   UAGAAC   CACugg    cu u
   |||||||   ||||||   ||||||    ||  
   AACCGUU   AUCUUG   GUGgcc    ga g
aUC       CAG      ---      --ua  u 

Annotation confidence Low

Genome context

chr3S: 59897286-59897350 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from xla-mir-182-1

Mature xla-miR-182-5p

• Accession: MIMAT0046490
• Description: Xenopus laevis xla-miR-182-5p mature miRNA
• Sequence: 1 - UUUGGCAAUGGUAGAACUCACAC - 23
• Evidence: experimental ; Illumina [1]

Mature xla-miR-182-3p

• Accession: MIMAT0046491
• Description: Xenopus laevis xla-miR-182-3p mature miRNA
• Sequence: 44 - GUGGUUCUAGACUUGCCAACU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38