Stem-loop xla-mir-183

Accession

MI0038274

Description

Xenopus laevis xla-mir-183 precursor miRNA

Literature search

4 open access papers mention xla-mir-183
(66 sentences)

Sequence

37686 reads, 5040.0 reads per million, 18 experiments

UAUGGCACUGGUAGAAUUCACUGUGaaaacacaaaaucagUGAAUUACCAUAGGGCCAUAAA
((((((..(((((..((((((((..............)))))))))))))....))))))..

Structure

--      --AC     GA        UGaaaa 
  UAUGGC    UGGUA  AUUCACUG      c
  ||||||    |||||  ||||||||       
  AUACCG    ACCAU  UAAGUgac      a
AA      GGAU     --        uaaaac 

Annotation confidence High

Genome context

chr3S: 59902034-59902095 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from xla-mir-183

Mature xla-miR-183-5p

• Accession: MIMAT0046493
• Description: Xenopus laevis xla-miR-183-5p mature miRNA
• Sequence: 1 - UAUGGCACUGGUAGAAUUCACUGUG - 25
• Evidence: experimental ; Illumina [1]

Mature xla-miR-183-3p

• Accession: MIMAT0046494
• Description: Xenopus laevis xla-miR-183-3p mature miRNA
• Sequence: 41 - UGAAUUACCAUAGGGCCAUAAA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38