miRBase entry: xla-mir-183

Stem-loop xla-mir-183


Accession
MI0038274
Description
Xenopus laevis xla-mir-183 precursor miRNA

Literature search
1 open access papers mention xla-mir-183
(1 sentences)

Sequence

UAUGGCACUGGUAGAAUUCACUGugaaaacacaaaaucaGUGAAUUACCAUAGGGCCAUAAA
((((((..(((((..((((((((..............)))))))))))))....))))))..

Structure
--      --AC     GA        ugaaaa 
  UAUGGC    UGGUA  AUUCACUG      c
  ||||||    |||||  ||||||||       
  AUACCG    ACCAU  UAAGUGac      a
AA      GGAU     --        uaaaac 


Annotation confidence Not enough data
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Genome context
chr3S: 59902034-59902095 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from xla-mir-183
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-183-5p

Accession MIMAT0046493
Description Xenopus laevis xla-miR-183-5p mature miRNA
Sequence 1 - UAUGGCACUGGUAGAAUUCACUG - 23
Evidence experimental
Illumina [1]

Mature xla-miR-183-3p

Accession MIMAT0046494
Description Xenopus laevis xla-miR-183-3p mature miRNA
Sequence 40 - GUGAAUUACCAUAGGGCCAUAAA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38