Stem-loop xla-mir-18b

Accession

MI0038276

Description

Xenopus laevis xla-mir-18b precursor miRNA

Literature search

3 open access papers mention xla-mir-18b
(12 sentences)

Sequence

6111 reads, 299.0 reads per million, 18 experiments

UAAGGUGCAUCUAGUGCAGAUAGUGaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUG
.((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).))))...

Structure

--U    U    C   U    A   -  aa u 
   AAGG GCAU UAG GCAG UAG UG  g a
   |||| |||| ||| |||| ||| ||  | g
   UUCC CGUG AUC CGUC Auc ac  u a
GUC    U    A   C    -   u  ga u 

Annotation confidence High

Genome context

chr2S: 91488841-91488903 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from xla-mir-18b

Mature xla-miR-18b-5p

• Accession: MIMAT0046497
• Description: Xenopus laevis xla-miR-18b-5p mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGCAGAUAGUG - 25
• Evidence: experimental ; Illumina [1]

Mature xla-miR-18b-3p

• Accession: MIMAT0046498
• Description: Xenopus laevis xla-miR-18b-3p mature miRNA
• Sequence: 42 - ACUGCCCUAAGUGCUCCUUCUG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38