miRBase entry: xla-mir-192

Stem-loop xla-mir-192

Accession

MI0038280

Description

Xenopus laevis xla-mir-192 precursor miRNA

Sequence

AUGACCUAUGAAUUGACAGCCaguggauguacagucugcCUGUCAAUUCUGUAGGCCACAG
.((.(((((((((((((((...((((((.....)))))))))))))))).))))).))...

Structure

--A  A     -          CCa      g 
   UG CCUAU GAAUUGACAG   guggau u
   || ||||| ||||||||||   |||||| a
   AC GGAUG CUUAACUGUC   cgucug c
GAC  C     U          ---      a

Annotation confidence Not enough data

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Genome context

chr4L: 21828334-21828394 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-192

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xla-miR-192-5p

Accession	MIMAT0046504
Description	Xenopus laevis xla-miR-192-5p mature miRNA
Sequence	1 - AUGACCUAUGAAUUGACAGCC - 21
Evidence	experimental Illumina [1]

Mature xla-miR-192-3p

Accession	MIMAT0046505
Description	Xenopus laevis xla-miR-192-3p mature miRNA
Sequence	40 - CUGUCAAUUCUGUAGGCCACAG - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 26548531
Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
"Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
"Dev Biol (2016) 409:26-38