Stem-loop xla-mir-192a

Accession

MI0038280

Description

Xenopus laevis xla-mir-192a precursor miRNA

Literature search

1 open access papers mention xla-mir-192a
(3 sentences)

Sequence

141378 reads, 3436.0 reads per million, 18 experiments

AUGACCUAUGAAUUGACAGCCAGuggauguacagucugCCUGUCAAUUCUGUAGGCCACAG
.((.(((((((((((((((...((((((.....)))))))))))))))).))))).))...

Structure

--A  A     -          CCA      g 
   UG CCUAU GAAUUGACAG   Guggau u
   || ||||| ||||||||||   |||||| a
   AC GGAUG CUUAACUGUC   Cgucug c
GAC  C     U          ---      a 

Annotation confidence High

Genome context

chr4L: 21828334-21828394 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-192a

Mature xla-miR-192a-5p

• Accession: MIMAT0046504
• Description: Xenopus laevis xla-miR-192a-5p mature miRNA
• Sequence: 1 - AUGACCUAUGAAUUGACAGCCAG - 23
• Evidence: experimental ; Illumina [1]

Mature xla-miR-192a-3p

• Accession: MIMAT0046505
• Description: Xenopus laevis xla-miR-192a-3p mature miRNA
• Sequence: 39 - CCUGUCAAUUCUGUAGGCCACAG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38