miRBase entry: xla-mir-19b-2

Stem-loop xla-mir-19b-2

Accession

MI0038285

Description

Xenopus laevis xla-mir-19b-2 precursor miRNA

Sequence

AGUUUUGCAGGUUUGCAUCCAGCUuuucucuggcuugcUGUGCAAAUCCAUGCAAAACUGAU
(((((((((((((((((..((((.............)))))))))).)).)))))))))...

Structure

---         -  -      UC    Uuuuc 
   AGUUUUGCA GG UUUGCA  CAGC     u
   ||||||||| || ||||||  ||||     c
   UCAAAACGU CC AAACGU  GUcg     u
UAG         A  U      --    uucgg

Annotation confidence Not enough data

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Genome context

chr2S: 91488415-91488476 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from xla-mir-19b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xla-miR-19b-5p

Accession	MIMAT0046514
Description	Xenopus laevis xla-miR-19b-5p mature miRNA
Sequence	1 - AGUUUUGCAGGUUUGCAUCCAGCU - 24
Evidence	experimental Illumina [1]

Mature xla-miR-19b-3p

Accession	MIMAT0046515
Description	Xenopus laevis xla-miR-19b-3p mature miRNA
Sequence	39 - UGUGCAAAUCCAUGCAAAACUGAU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 26548531
Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
"Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
"Dev Biol (2016) 409:26-38