Stem-loop xla-mir-200a-2

Accession

MI0038288

Description

Xenopus laevis xla-mir-200a-2 precursor miRNA

Literature search

2 open access papers mention xla-mir-200a-2
(2 sentences)

Sequence

68278 reads, 2181.0 reads per million, 18 experiments

CAUCUUACUAGACAGUGCUGGAUuuauuuuauguuuucUAACACUGUCUGGUAACGAUGUUU
(((((((((((((((((.((((..............)))).))))))))))))).))))...

Structure

---    -             C    Uuuauu 
   CAUC UUACUAGACAGUG UGGA      u
   |||| ||||||||||||| ||||       
   GUAG AAUGGUCUGUCAC AUcu      u
UUU    C             A    uuugua 

Annotation confidence High

Genome context

chr7L: 78951028-78951089 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-200a-2

Mature xla-miR-200a-5p

• Accession: MIMAT0046518
• Description: Xenopus laevis xla-miR-200a-5p mature miRNA
• Sequence: 1 - CAUCUUACUAGACAGUGCUGGAU - 23
• Evidence: experimental ; Illumina [1]

Mature xla-miR-200a-3p

• Accession: MIMAT0046519
• Description: Xenopus laevis xla-miR-200a-3p mature miRNA
• Sequence: 39 - UAACACUGUCUGGUAACGAUGUUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38