Stem-loop xla-mir-200b

Accession

MI0038289

Description

Xenopus laevis xla-mir-200b precursor miRNA

Literature search

1 open access papers mention xla-mir-200b
(1 sentences)

Sequence

CAUCUUACUGGGCAGCAUUGgauuaugucuauguuucUAAUACUGCCUGGUAAUGAUGAU
(((((((((((((((.((((((.............)))))).))))))))))).))))..

Structure

--    -           C      uuaug 
  CAUC UUACUGGGCAG AUUGga     u
  |||| ||||||||||| ||||||     c
  GUAG AAUGGUCCGUC UAAUcu     u
UA    U           A      uugua 

Annotation confidence Not enough data

Genome context

chr7S: 64724919-64724978 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from xla-mir-200b

Mature xla-miR-200b-5p

• Accession: MIMAT0046520
• Description: Xenopus laevis xla-miR-200b-5p mature miRNA
• Sequence: 1 - CAUCUUACUGGGCAGCAUUG - 20
• Evidence: experimental ; Illumina [1]

Mature xla-miR-200b-3p

• Accession: MIMAT0046521
• Description: Xenopus laevis xla-miR-200b-3p mature miRNA
• Sequence: 38 - UAAUACUGCCUGGUAAUGAUGAU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38