miRBase entry: xla-mir-20a

Stem-loop xla-mir-20a

Accession

MI0038293

Description

Xenopus laevis xla-mir-20a precursor miRNA

Sequence

UAAAGUGCUUAUAGUGCAGGUAGuuuuuuguguauucuACUGCAUUAAGAGCACUUAAAGU
..((((((((.((((((((.(((..(.......)..))))))))))).)))))))).....

Structure

---UA        A        G   uu uu 
     AAGUGCUU UAGUGCAG UAG  u  u
     |||||||| |||||||| |||  |  g
     UUCACGAG AUUACGUC Auc  a  u
UGAAA        A        -   uu ug

Annotation confidence Not enough data

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Genome context

chr2L: 107332044-107332104 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from xla-mir-20a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xla-miR-20a-5p

Accession	MIMAT0046528
Description	Xenopus laevis xla-miR-20a-5p mature miRNA
Sequence	1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence	experimental Illumina [1]

Mature xla-miR-20a-3p

Accession	MIMAT0046529
Description	Xenopus laevis xla-miR-20a-3p mature miRNA
Sequence	39 - ACUGCAUUAAGAGCACUUAAAGU - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 26548531
Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
"Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
"Dev Biol (2016) 409:26-38