Stem-loop xla-mir-221-1

Accession

MI0038301

Description

Xenopus laevis xla-mir-221-1 precursor miRNA

Literature search

5 open access papers mention xla-mir-221-1
(40 sentences)

Sequence

15568 reads, 487.0 reads per million, 18 experiments

ACCUGGCAUACAAUGUAGAaaacuguguuuguaaaucaacAGCUACAUUGUCUGCUGGGUUU
((((((((.(((((((((....((((............))))))))))))).))))))))..

Structure

--        U         Aaaa    guuug 
  ACCUGGCA ACAAUGUAG    cugu     u
  |||||||| |||||||||    ||||      
  UGGGUCGU UGUUACAUC    GAca     a
UU        C         ----    acuaa 

Annotation confidence High

Genome context

chr2S: 44258709-44258770 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-221-1

Mature xla-miR-221-1-5p

• Accession: MIMAT0046542
• Description: Xenopus laevis xla-miR-221-1-5p mature miRNA
• Sequence: 1 - ACCUGGCAUACAAUGUAGA - 19
• Evidence: experimental ; Illumina [1]

Mature xla-miR-221-1-3p

• Accession: MIMAT0046543
• Description: Xenopus laevis xla-miR-221-1-3p mature miRNA
• Sequence: 41 - AGCUACAUUGUCUGCUGGGUUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38