Stem-loop xla-mir-221

Accession

MI0038301

Description

Xenopus laevis xla-mir-221 precursor miRNA

Literature search

1 open access papers mention xla-mir-221
(5 sentences)

Sequence

ACCUGGCAUACAAUGUAGAAAACUGUguuuguaaaucaacAGCUACAUUGUCUGCUGGGUUU
((((((((.(((((((((....((((............))))))))))))).))))))))..

Structure

--        U         AAAA    guuug 
  ACCUGGCA ACAAUGUAG    CUGU     u
  |||||||| |||||||||    ||||      
  UGGGUCGU UGUUACAUC    GAca     a
UU        C         ----    acuaa 

Annotation confidence Not enough data

Genome context

chr2S: 44258709-44258770 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-221

Mature xla-miR-221-5p

• Accession: MIMAT0046542
• Description: Xenopus laevis xla-miR-221-5p mature miRNA
• Sequence: 1 - ACCUGGCAUACAAUGUAGAAAACUGU - 26
• Evidence: experimental ; Illumina [1]

Mature xla-miR-221-3p

• Accession: MIMAT0046543
• Description: Xenopus laevis xla-miR-221-3p mature miRNA
• Sequence: 41 - AGCUACAUUGUCUGCUGGGUUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38