Stem-loop xla-mir-25-1

Accession

MI0038308

Description

Xenopus laevis xla-mir-25-1 precursor miRNA

Literature search

5 open access papers mention xla-mir-25-1
(9 sentences)

Sequence

32121 reads, 1628.0 reads per million, 18 experiments

AGGCAGAGACAGGAGCAAuugcugguguaccuugggagCAUUGCACUUGUCUCGGUCUGA
((((.((((((((.(((((.(((.............)))))))).)))))))).))))..

Structure

--    A        A     u   ggugu 
  AGGC GAGACAGG GCAAu gcu     a
  |||| |||||||| ||||| |||     c
  UCUG CUCUGUUC CGUUA Cga     c
AG    G        A     -   ggguu 

Annotation confidence Medium

Genome context

chr3S: 121108998-121109057 [+]

Mature xla-miR-25-1-5p

• Accession: MIMAT0046553
• Description: Xenopus laevis xla-miR-25-1-5p mature miRNA
• Sequence: 1 - AGGCAGAGACAGGAGCAA - 18
• Evidence: experimental ; Illumina [1]

Mature xla-miR-25-1-3p

• Accession: MIMAT0046554
• Description: Xenopus laevis xla-miR-25-1-3p mature miRNA
• Sequence: 39 - CAUUGCACUUGUCUCGGUCUGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38