Stem-loop xla-mir-27a

Accession

MI0038311

Description

Xenopus laevis xla-mir-27a precursor miRNA

Sequence

GGGCUUAGCUGUAUUGUGAGCAcuguuacucucgcaccugUUCACAGUGGCUAAGUUCCG
((((((((((..((((((((((.(((.......)))..))))))))))))))))))))..

Structure

--          GU          -c   ua 
  GGGCUUAGCU  AUUGUGAGCA  ugu  c
  ||||||||||  ||||||||||  |||  u
  CUUGAAUCGG  UGACACUUgu  acg  c
GC          --          cc   cu 

Annotation confidence Low

Genome context

chr3L: 127494213-127494272 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from xla-mir-27a

Mature xla-miR-27a-5p

• Accession: MIMAT0046558
• Description: Xenopus laevis xla-miR-27a-5p mature miRNA
• Sequence: 1 - GGGCUUAGCUGUAUUGUGAGCA - 22
• Evidence: experimental ; Illumina [1]

Mature xla-miR-27a-3p

• Accession: MIMAT0046559
• Description: Xenopus laevis xla-miR-27a-3p mature miRNA
• Sequence: 41 - UUCACAGUGGCUAAGUUCCG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38