Stem-loop xla-mir-338-1

Accession

MI0038322

Description

Xenopus laevis xla-mir-338-1 precursor miRNA

Literature search

2 open access papers mention xla-mir-338-1
(15 sentences)

Sequence

3020 reads, 541.0 reads per million, 18 experiments

AACAAUAUCCUGAUGCCGUCUGAGUgugcgggaaagcUCCAGCAUCAGUGAUUUUGUUgg
(((((.((((((((((.(...((((..........))))).))))))).))).)))))..

Structure

--     U   -       C UCU    gugc 
  AACAA AUC CUGAUGC G   GAGU    g
  ||||| ||| ||||||| |   ||||     
  UUGUU UAG GACUACG C   CUcg    g
gg     U   U       A ---    aaag 

Annotation confidence High

Genome context

chr9_10S: 91668157-91668216 [-]

Mature xla-miR-338-1-5p

• Accession: MIMAT0046578
• Description: Xenopus laevis xla-miR-338-1-5p mature miRNA
• Sequence: 1 - AACAAUAUCCUGAUGCCGUCUGAGU - 25
• Evidence: experimental ; Illumina [1]

Mature xla-miR-338-1-3p

• Accession: MIMAT0046579
• Description: Xenopus laevis xla-miR-338-1-3p mature miRNA
• Sequence: 38 - UCCAGCAUCAGUGAUUUUGUU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38