miRBase entry: xla-mir-428b

Stem-loop xla-mir-428b

Accession

MI0038333

Description

Xenopus laevis xla-mir-428b precursor miRNA

Sequence

AGCCAAACAGAAGCUCAUUCuuguugucucuaugagAAAGUGCUUCUCGUUCGGCUGA
((((.(((((((((.(.(((((((.......))))))).).)))))).))).))))..

Structure

--    A   -      U A       ug 
  AGCC AAC AGAAGC C UUCuugu  u
  |||| ||| |||||| | |||||||  c
  UCGG UUG UCUUCG G AAgagua  u
AG    C   C      U A       uc

Annotation confidence Not enough data

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Genome context

chr8L: 529335-529392 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-428b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xla-miR-428b-5p

Accession	MIMAT0046599
Description	Xenopus laevis xla-miR-428b-5p mature miRNA
Sequence	1 - AGCCAAACAGAAGCUCAUUC - 20
Evidence	experimental Illumina [1]

Mature xla-miR-428b-3p

Accession	MIMAT0046600
Description	Xenopus laevis xla-miR-428b-3p mature miRNA
Sequence	37 - AAAGUGCUUCUCGUUCGGCUGA - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 26548531
Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
"Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
"Dev Biol (2016) 409:26-38