Stem-loop xla-mir-92a-3

Accession

MI0038338

Description

Xenopus laevis xla-mir-92a-3 precursor miRNA

Literature search

2 open access papers mention xla-mir-92a-3
(2 sentences)

Sequence

1378696 reads, 49379.0 reads per million, 18 experiments

uauGGGUGGGGAUUUGUUGCACGACUUGuguuuuuauuaaaagUAUUGCACUUGUCCCGGCCUGUgga
(((((((.(((((..((.(((..((((.............))))..)))))..))))).)))))))..

Structure

--       G     UU  U   CG    Guguu 
  uauGGGU GGGAU  GU GCA  ACUU     u
  ||||||| |||||  || |||  ||||     u
  gUGUCCG CCCUG  CA CGU  Ugaa     u
ag       G     UU  -   UA    aauua 

Annotation confidence High

Genome context

chr8S: 74307587-74307654 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from xla-mir-92a-3

Mature xla-miR-92a-5p

• Accession: MIMAT0046609
• Description: Xenopus laevis xla-miR-92a-5p mature miRNA
• Sequence: 4 - GGGUGGGGAUUUGUUGCACGACUUG - 28
• Evidence: experimental ; Illumina [1]

Mature xla-miR-92a-1-3p

• Accession: MIMAT0011149
• Description: Xenopus laevis xla-miR-92a-1-3p mature miRNA
• Sequence: 44 - UAUUGCACUUGUCCCGGCCUGU - 65
• Evidence: not_experimental

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38