Stem-loop xla-mir-96

Accession

MI0038342

Description

Xenopus laevis xla-mir-96 precursor miRNA

Literature search

1 open access papers mention xla-mir-96
(1 sentences)

Sequence

UUUGGCACUAGCACAUUUUUGCUuuuguauauauacuuugagCAAUUAUGUGUAGUGCCAAUAU
.(((((((((.(((((..((((((..(((....)))...))))))..))))))))))))))...

Structure

--U         G     UU      -uu   u 
   UUGGCACUA CACAU  UUGCUu   gua a
   ||||||||| |||||  ||||||   |||  
   AACCGUGAU GUGUA  AACgag   cau u
UAU         -     UU      uuu   a 

Annotation confidence Low

Genome context

chr3S: 59901148-59901211 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from xla-mir-96

Mature xla-miR-96-5p

• Accession: MIMAT0046615
• Description: Xenopus laevis xla-miR-96-5p mature miRNA
• Sequence: 1 - UUUGGCACUAGCACAUUUUUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature xla-miR-96-3p

• Accession: MIMAT0046616
• Description: Xenopus laevis xla-miR-96-3p mature miRNA
• Sequence: 43 - CAAUUAUGUGUAGUGCCAAUAU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38