Stem-loop gga-mir-12221-1

Accession

MI0040673

Description

Gallus gallus gga-mir-12221-1 precursor miRNA

Sequence

1111 reads, 2.0 reads per million, 181 experiments

AGCGGACAAAGGACGAUGGCACaugaacugucacaggccuccagagcacuucgugUGCCAUCGUCCUUUGUCCGCUGc
(((((((((((((((((((((((((((.(((....((...))...))).)))))))))))))))))))))))))))..

Structure

--                           c   caca  c 
  AGCGGACAAAGGACGAUGGCACaugaa ugu    gg  
  ||||||||||||||||||||||||||| |||    || c
  UCGCCUGUUUCCUGCUACCGUgugcuu acg    cc  
cG                           c   -aga  u 

Annotation confidence Medium

Genome context

12: 5497986-5498063 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-12221-1

Mature gga-miR-12221-5p

• Accession: MIMAT0049914
• Description: Gallus gallus gga-miR-12221-5p mature miRNA
• Sequence: 1 - AGCGGACAAAGGACGAUGGCAC - 22
• Evidence: experimental ; Illumina [1]

Mature gga-miR-12221-3p

• Accession: MIMAT0049915
• Description: Gallus gallus gga-miR-12221-3p mature miRNA
• Sequence: 56 - UGCCAUCGUCCUUUGUCCGCUG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973