miRBase entry: gga-mir-12242

Stem-loop gga-mir-12242

Accession

MI0040704

Description

Gallus gallus gga-mir-12242 precursor miRNA

Sequence

GCCGAGGGGGGGUUGCGGCGCAGUucucccggcucugcUGCCCGCAGCACCGCUUCUCGCU
((.(((((((((((((((.(((((............)))))))))))).)).)))))))).

Structure

-  C      -  -       C     ucucc 
 GC GAGGGG GG GUUGCGG GCAGU     c
 || |||||| || ||||||| |||||      
 CG CUCUUC CC CGACGCC CGUcg     g
U  -      G  A       -     ucucg

Annotation confidence Not enough data

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Genome context

chr20: 8883519-8883579 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-12242

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gga-miR-12242-5p

Accession	MIMAT0049972
Description	Gallus gallus gga-miR-12242-5p mature miRNA
Sequence	1 - GCCGAGGGGGGGUUGCGGCGCAGU - 24
Evidence	experimental Illumina [1]

Mature gga-miR-12242-3p

Accession	MIMAT0049973
Description	Gallus gallus gga-miR-12242-3p mature miRNA
Sequence	39 - UGCCCGCAGCACCGCUUCUCGCU - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 29079676
Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
"Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
Genome Res (2017) 12:1961-1973