Stem-loop gga-mir-1388b

Accession

MI0040705

Description

Gallus gallus gga-mir-1388b precursor miRNA

Literature search

1 open access papers mention gga-mir-1388b
(1 sentences)

Sequence

25040 reads, 66.0 reads per million, 178 experiments

CAUGGGCUGACGAACCUGAGAuugacccucauguuucacCAUUCUCAGGUUAGACAGUCCucga
...((((((...(((((((((.((...............)).)))))))))...))))))....

Structure

-CAU      ACG         u  acccuc 
    GGGCUG   AACCUGAGA ug      a
    ||||||   ||||||||| ||      u
    CCUGAC   UUGGACUCU AC      g
agcu      AGA         U  cacuuu 

Annotation confidence Medium

Genome context

20: 9852553-9852616 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1388b

Mature gga-miR-1388b-5p

• Accession: MIMAT0049974
• Description: Gallus gallus gga-miR-1388b-5p mature miRNA
• Sequence: 1 - CAUGGGCUGACGAACCUGAGA - 21
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1388b-3p

• Accession: MIMAT0049975
• Description: Gallus gallus gga-miR-1388b-3p mature miRNA
• Sequence: 40 - CAUUCUCAGGUUAGACAGUCC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973