miRBase entry: gga-mir-12282

Stem-loop gga-mir-12282


Accession
MI0040754
Description
Gallus gallus gga-mir-12282 precursor miRNA


Sequence

25 reads, 1 reads per million, 5 experiments
UGCCGGGGCGCUGGGGAGGGGCAGCuccccuuugcugcccugcUUCUCCUCCCUUCGCACGGCGCA
.((((..(((..(((((((((((((........))))))........))))))).))).))))...

Structure
--U    GG   CU       --------      ucc 
   GCCG  GCG  GGGGAGG        GGCAGC   c
   ||||  |||  |||||||        ||||||    
   CGGC  CGC  UCCCUCC        ccgucg   c
ACG    -A   -U       UCUUcguc      uuu 


Annotation confidence Not enough data
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Genome context
chr8: 28362266-28362331 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-mir-12282
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-12282-5p

Accession MIMAT0050065
Description Gallus gallus gga-miR-12282-5p mature miRNA
Sequence 1 - UGCCGGGGCGCUGGGGAGGGGCAGC - 25
Evidence experimental
Illumina [1]

Mature gga-miR-12282-3p

Accession MIMAT0050066
Description Gallus gallus gga-miR-12282-3p mature miRNA
Sequence 44 - UUCUCCUCCCUUCGCACGGCGCA - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973