miRBase entry: mdo-mir-9c-3

Stem-loop mdo-mir-9c-3


Accession
MI0040781
Description
Monodelphis domestica mdo-mir-9c-3 precursor miRNA


Sequence

1635607 reads, 2 reads per million, 5 experiments
UUCGGUUAUCUAGCUUUAUGAuagcucaauaacacucAUACAGCUAGAUAACCAAAGA
...((((((((((((.(((((..(........)..))))).)))))))))))).....

Structure
--UUC            U     ua cuc 
     GGUUAUCUAGCU UAUGA  g   a
     |||||||||||| |||||  |    
     CCAAUAGAUCGA AUAcu  c   a
AGAAA            C     ca aau 


Annotation confidence Not enough data
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Genome context
chr1: 122711587-122711644 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-9c-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-9c-5p

Accession MIMAT0050101
Description Monodelphis domestica mdo-miR-9c-5p mature miRNA
Sequence 1 - UUCGGUUAUCUAGCUUUAUGA - 21
Evidence experimental
Illumina [1]

Mature mdo-miR-9c-3p

Accession MIMAT0050102
Description Monodelphis domestica mdo-miR-9c-3p mature miRNA
Sequence 38 - AUACAGCUAGAUAACCAAAGA - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973