miRBase entry: mdo-mir-3600

Stem-loop mdo-mir-3600


Accession
MI0040836
Description
Monodelphis domestica mdo-mir-3600 precursor miRNA


Sequence

7284 reads, 2 reads per million, 5 experiments
caguucuucaacuggcagcuuuagcugggacaagacauaAAGCUCGCCACUGAAGAACUGCu
((((((((((..((((((((((((((......)).).))))))).)))).))))))))))..

Structure
--          ac    -       - -  gg 
  caguucuuca  uggc agcuuua g cu  g
  ||||||||||  |||| ||||||| | ||   
  GUCAAGAAGU  ACCG UCGAAau c ga  a
uC          -C    C       a a  ac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 517205535-517205596 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mdo-mir-3600
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-3600-3p

Accession MIMAT0050195
Description Monodelphis domestica mdo-miR-3600-3p mature miRNA
Sequence 40 - AAGCUCGCCACUGAAGAACUGC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973