Stem-loop mdo-mir-12341

Accession

MI0040853

Description

Monodelphis domestica mdo-mir-12341 precursor miRNA

Sequence

2907 reads, 50 reads per million, 5 experiments

GUGGGGGCGCUGAGACUGAAGaccgagugaggugaggccuagccagggcugggacacccugaguCCUGUGUCUCCUCACCCCCAGgc
.((((((.(..(((((....(((..((...((((...((((((....)))))).))))))..)))....)))))..).))))))...

Structure

--G      C CU     UGAA   cg  uga    agg      c 
   UGGGGG G  GAGAC    Gac  ag   ggug   ccuagc a
   |||||| |  |||||    |||  ||   ||||   ||||||  
   ACCCCC C  CUCUG    Cug  uc   ccac   gggucg g
cgG      A UC     UGUC   ag  ---    --a      g 

Annotation confidence Not enough data

Genome context

chr3: 429211873-429211959 [+]

Mature mdo-miR-12341-5p

• Accession: MIMAT0050222
• Description: Monodelphis domestica mdo-miR-12341-5p mature miRNA
• Sequence: 1 - GUGGGGGCGCUGAGACUGAAG - 21
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-12341-3p

• Accession: MIMAT0050223
• Description: Monodelphis domestica mdo-miR-12341-3p mature miRNA
• Sequence: 65 - CCUGUGUCUCCUCACCCCCAG - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973