miRBase entry: mdo-mir-12376

Stem-loop mdo-mir-12376


Accession
MI0040907
Description
Monodelphis domestica mdo-mir-12376 precursor miRNA


Sequence

24 reads, 2 reads per million, 3 experiments
gGCGAGCCUGGGGGCGGGGAGAgaacgguggcugaagggaccUCCCCGCCCCCAGGCCGCGCcu
((((.((((((((((((((((.(..(...........)..)))))))))))))))))..)))).

Structure
-    -A                A aa ggug 
 gGCG  GCCUGGGGGCGGGGAG g  c    g
 ||||  |||||||||||||||| |  |    c
 cCGC  CGGACCCCCGCCCCUc c  g    u
u    GC                - ag gaag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr6: 85995833-85995896 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-12376
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-12376-5p

Accession MIMAT0050317
Description Monodelphis domestica mdo-miR-12376-5p mature miRNA
Sequence 2 - GCGAGCCUGGGGGCGGGGAGA - 22
Evidence experimental
Illumina [1]

Mature mdo-miR-12376-3p

Accession MIMAT0050318
Description Monodelphis domestica mdo-miR-12376-3p mature miRNA
Sequence 43 - UCCCCGCCCCCAGGCCGCGC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973