miRBase entry: mdo-mir-12402-2

Stem-loop mdo-mir-12402-2


Accession
MI0040960
Description
Monodelphis domestica mdo-mir-12402-2 precursor miRNA


Sequence

7 reads, 1 reads per million, 1 experiments
AUGGCUGAUGUUUGGAGGGUGAguaagucaaguaagccucACCCCUCCUGAUACAGCCAGGACU
.((((((.((((.((((((((((..............)))).)))))).)))))))))).....

Structure
----A      A    U      -    uaaguc 
     UGGCUG UGUU GGAGGG UGAg      a
     |||||| |||| |||||| ||||       
     ACCGAC AUAG CCUCCC Acuc      a
UCAGG      -    U      C    cgaaug 


Annotation confidence Not enough data
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Genome context
chrX: 35349267-35349330 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-12402-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-12402-5p

Accession MIMAT0050401
Description Monodelphis domestica mdo-miR-12402-5p mature miRNA
Sequence 1 - AUGGCUGAUGUUUGGAGGGUGA - 22
Evidence experimental
Illumina [1]

Mature mdo-miR-12402-3p

Accession MIMAT0050402
Description Monodelphis domestica mdo-miR-12402-3p mature miRNA
Sequence 41 - ACCCCUCCUGAUACAGCCAGGACU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973