miRBase entry: mdo-mir-16b

Stem-loop mdo-mir-16b


Accession
MI0040961
Description
Monodelphis domestica mdo-mir-16b precursor miRNA


Sequence

227998 reads, 13285.0 reads per million, 5 experiments
UAGCAGCACGUCAAAACUGGAGucacaaaguucaauccucCAGUAUUGCCUUGCUGCUUGAGu
.(((((((.(.(((.(((((((...............))))))).))).).))))))).....

Structure
----U       C U   A       ucacaa 
     AGCAGCA G CAA ACUGGAG      a
     ||||||| | ||| |||||||      g
     UCGUCGU C GUU UGACcuc      u
uGAGU       U C   A       cuaacu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
ref|NC_077235.2|: 40659433-40659495 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-16b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-16b-5p

Accession MIMAT0050403
Description Monodelphis domestica mdo-miR-16b-5p mature miRNA
Sequence 1 - UAGCAGCACGUCAAAACUGGAG - 22
Evidence experimental
Illumina [1]

Mature mdo-miR-16b-3p

Accession MIMAT0050404
Description Monodelphis domestica mdo-miR-16b-3p mature miRNA
Sequence 41 - CAGUAUUGCCUUGCUGCUUGAG - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973