Stem-loop xtr-mir-427c-1

Accession

MI0048378

Description

Xenopus tropicalis xtr-mir-427c-1 precursor miRNA

Sequence

gaagugcugcagacugaccaauuugauaucACCCAAAACUGAGCCCUCUCUuguguugucuugauggucagAAAGUGCUUCCUGUUUUGGGUGUuaucgauuggaaaguucaacccuugacauu
.(((.(.((..((((..((((((.((((.((((((((((.((((.((.(((..((((.....))))...))).)).))))...)))))))))).))))))))))..)))))).).)))......

Structure

-----g   u c  ca    ga      u    u          --U    C  C   -ug    g 
      aag g ug  gacu  ccaauu gaua cACCCAAAAC   GAGC CU UCU   uguu u
      ||| | ||  ||||  |||||| |||| ||||||||||   |||| || |||   |||| c
      uuc c ac  uuga  gguuag cuau GUGGGUUUUG   UUCG GA Aga   guag u
uuacag   c a  --    aa      -    U          UCC    U  A   cug    u 

Annotation confidence Not enough data

Genome context

3: 146262040-146262163 [-]

Clustered miRNAs

17 other miRNAs are < 10 kb from xtr-mir-427c-1

Mature xtr-miR-427c-5p

• Accession: MIMAT0075000
• Description: Xenopus tropicalis xtr-miR-427c-5p mature miRNA
• Sequence: 31 - ACCCAAAACUGAGCCCUCUCU - 51
• Evidence: not_experimental

Mature xtr-miR-427c-3p

• Accession: MIMAT0074999
• Description: Xenopus tropicalis xtr-miR-427c-3p mature miRNA
• Sequence: 72 - AAAGUGCUUCCUGUUUUGGGUGU - 94
• Evidence: not_experimental

References