Stem-loop sequence hsa-mir-9-3

Accession

MI0000468 (change log)

Symbol

HGNC:MIR9-3

Description

Homo sapiens miR-9-3 stem-loop

Gene family

MIPF0000014; mir-9

Literature search

542 open access papers mention hsa-mir-9-3
(3299 sentences)

Stem-loop

   g    cc       -  c               g     gu  ca 
5'  gagg  cguuucu cu uuugguuaucuagcu uauga  gc  c
    ||||  ||||||| || ||||||||||||||| |||||  ||   
3'  cucu  guaaaga ga aagccaauagaucga auacu  cg  a
   a    ua       u  -               a     gc  ag 

Deep sequencing

805451 reads, 1.07e+03 reads per million, 153 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr15: 89368017-89368106 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000416265 ; ACAN-001; intron 1

  OTTHUMT00000418839 ; ACAN-008; intron 1

  OTTHUMT00000416269 ; ACAN-004; intron 1

  ENST00000558207 ; ACAN-001; intron 1

  ENST00000559004 ; ACAN-008; intron 1

  ENST00000352105 ; ACAN-004; intron 1

  ENST00000439576 ; ACAN-201; intron 1

Database links

• EntrezGene:MIR9-3
• HGNC:MIR9-3
• RNAcentral:URS00005D97FE_9606
• miRBase Tracker:MI0000468

Mature sequence hsa-miR-9-5p

• Accession: MIMAT0000441
• Previous IDs: hsa-miR-9
• Sequence: 16 - ucuuugguuaucuagcuguauga - 38
• Deep sequencing: 2152514 reads, 151 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00004208C5_9606
• Predicted targets:
  • TargetMiner:hsa-miR-9-5p
  • TargetScanVert:hsa-miR-9-5p
  • miRDB:hsa-miR-9-5p
  • microrna.org:hsa-miR-9-5p

Mature sequence hsa-miR-9-3p

• Accession: MIMAT0000442
• Previous IDs: hsa-miR-9*
• Sequence: 55 - auaaagcuagauaaccgaaagu - 76
• Deep sequencing: 266091 reads, 137 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00003496BE_9606
• Predicted targets:
  • TargetMiner:hsa-miR-9-3p
  • TargetScanVert:hsa-miR-9-3p
  • miRDB:hsa-miR-9-3p
  • microrna.org:hsa-miR-9-3p

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).