Stem-loop sequence zma-MIR159b

Accession

MI0001810 (change log)

Description

Zea mays miR159b stem-loop

Gene family

MIPF0000010; MIR159

Literature search

31 open access papers mention zma-MIR159b
(160 sentences)

Stem-loop

   uagac     -  uc     --    u           a    uaaa        cu  -u   ug  a     g    u     guuc    ugu         -u  gagaga 
5'      ggucu gg  uuaag  gcgg gcucccuucaa ccaa    cggucgau  ga  ggg  gu cagcu cucg ucaug    ccac   cccaucuca  ca      g
        ||||| ||  |||||  |||| ||||||||||| ||||    ||||||||  ||  |||  || ||||| |||| |||||    ||||   |||||||||  ||       
3'      ucaga cc  gguuc  cguc cgagggaaguu gguu    gccaguug  cu  ccc  ca gucga gagc aguac    ggug   ggguagagu  gu      a
   ----u     a  cu     ua    u           a    uguc        --  uc   ug  c     g    c     guuu    uuc         uc  agagag 

Deep sequencing

12396 reads, 5.27e+03 reads per million, 211 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr8: 10950933-10951153 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from zma-MIR159b

• zma-MIR159k: chr8: 10947058-10947257 [+]
• zma-MIR159b: chr8: 10950933-10951153 [+]

Database links

• RNAcentral:URS000075BFF6_4577
• miRBase Tracker:MI0001810

Mature sequence zma-miR159b-5p

• Accession: MIMAT0015177
• Previous IDs: zma-miR159b*
• Sequence: 23 - gugcucccuucaaaccaauaa - 43
• Evidence: experimental; Illumina [2]

Mature sequence zma-miR159b-3p

• Accession: MIMAT0001712
• Previous IDs: zma-miR159b
• Sequence: 182 - uuuggauugaagggagcucug - 202
• Deep sequencing: 11468 reads, 211 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000035D5E3_4577

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).