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miRBase |
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Stem-loop sequence zma-MIR159b |
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Accession | MI0001810 (change log) | |||||
Description | Zea mays miR159b stem-loop | |||||
Gene family | MIPF0000010; MIR159 | |||||
Literature search |
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31 open access papers mention zma-MIR159b | |||||
Stem-loop |
uagac - uc -- u a uaaa cu -u ug a g u guuc ugu -u gagaga 5' ggucu gg uuaag gcgg gcucccuucaa ccaa cggucgau ga ggg gu cagcu cucg ucaug ccac cccaucuca ca g ||||| || ||||| |||| ||||||||||| |||| |||||||| || ||| || ||||| |||| ||||| |||| ||||||||| || 3' ucaga cc gguuc cguc cgagggaaguu gguu gccaguug cu ccc ca gucga gagc aguac ggug ggguagagu gu a ----u a cu ua u a uguc -- uc ug c g c guuu uuc uc agagag |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence zma-miR159b-5p |
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Accession | MIMAT0015177 |
Previous IDs | zma-miR159b* |
Sequence |
23 - gugcucccuucaaaccaauaa - 43 |
Evidence | experimental; Illumina [2] |
Mature sequence zma-miR159b-3p |
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Accession | MIMAT0001712 |
Previous IDs | zma-miR159b |
Sequence |
182 - uuuggauugaagggagcucug - 202 |
Deep sequencing | 11468 reads, 211 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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References |
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1 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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2 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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