miRBase entry: zma-MIR167g

Stem-loop zma-MIR167g


Accession
MI0001821
Description
Zea mays zma-MIR167g precursor miRNA
Gene family
MIPF0000125; MIR167_2

Literature search
29 open access papers mention zma-MIR167g
(127 sentences)

Sequence

22778 reads, 52881 reads per million, 12 experiments
aguggugcaccacgaguuggUGAAGCUGCCAGCAUGAUCUGguuaugaugguggugguauauguaagauggauguaaucuauacuacuaccggccccugucacucucucucucucccccgucccugacugucauauauggaucgacgaauccaagaugagaggggaagggagagagagagaggguaauuaaugagcaccaggaccaGGUCAUGCUGUAGUUUCAUCugcugguggccgcacau
....((((.((((.(((.(((((((((((.((((((((((((((.((..(((((((((((.....((((.......)))))))))))))))(((....)))((((((((((((((.(((.((((...((.((((...(((((......)))))..)))).)))))).))).)))))))))))))).............)).))))))))))))))))))))))))).))).))))..))))..

Structure
agug    -a    g   u           C              a  augguggugguauauguaagauggauguaaucuauacuacuaccggccccuguc              c   g    uga  g    aua     cg 
    gugc  ccac agu ggUGAAGCUGC AGCAUGAUCUGguu ug                                                      acucucucucucuc ccc uccc   cu ucau   uggau  a
    ||||  |||| ||| ||||||||||| |||||||||||||| ||                                                      |||||||||||||| ||| ||||   || ||||   |||||   
    cacg  ggug ucg CUACUUUGAUG UCGUACUGGaccag ac                                                      ugggagagagagag ggg aggg   ga agua   accua  c
--ua    cc    g   u           -              g  -----------------------------------------cacgaguaauuaa              a   a    ---  g    -ga     ag 


Annotation confidence Not enough data
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Genome context
chr3: 119394584-119394826 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from zma-MIR167g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR167g-5p

Accession MIMAT0001723
Description Zea mays zma-miR167g-5p mature miRNA
Sequence 21 - UGAAGCUGCCAGCAUGAUCUG - 41
Evidence experimental
Illumina [2]
Database links

Mature zma-miR167g-3p

Accession MIMAT0015188
Description Zea mays zma-miR167g-3p mature miRNA
Sequence 207 - GGUCAUGCUGUAGUUUCAUC - 226
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13