Stem-loop sequence ptc-MIR171a

AccessionMI0002277 (change log)
DescriptionPopulus trichocarpa miR171a stem-loop
Gene family MIPF0000030; MIR171_1
Literature search

6 open access papers mention ptc-MIR171a
(15 sentences)

Stem-loop 
   uca   aaa   g                       a    a     ccaa 
5'    gag   acg gauauugguacgguucaaucaga agua ugcuc    a
      |||   ||| ||||||||||||||||||||||| |||| |||||    a
3'    cuc   ugc cuauaaccgugccgaguuaguuu uuau augag    g
   -ua   aca   a                       g    c     auau
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000340.2: 764743-764846 [+]
intergenic
Database links

Mature sequence ptc-miR171a-5p

Accession MIMAT0022901
Sequence

13 -  

ggauauugguacgguucaauc

 - 33

Get sequence
Evidence experimental; miRNAseq [4]

Mature sequence ptc-miR171a-3p

Accession MIMAT0001983
Previous IDsptc-miR171a
Sequence

75 -  

uugagccgugccaauaucacg

 - 95

Get sequence
Evidence experimental; cloned [1], miRNAseq [4]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).
4
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).