Stem-loop sequence ptc-MIR172g

AccessionMI0002293 (change log)
DescriptionPopulus trichocarpa miR172g stem-loop
Gene family MIPF0000035; MIR172
Literature search

8 open access papers mention ptc-MIR172g
(33 sentences)

Stem-loop 
   cugu     ua  g                a   gc    uu       gugug   --   u  --u  u    uu 
5'     uugcc  ug agcaucaucaagauuc caa  uuua  agggcua     ugg  uga ga   gg ggcu  u
       |||||  || |||||||||||||||| |||  ||||  |||||||     |||  ||| ||   || ||||   
3'     aacgg  ac ucguaguaguucuaag guu  aagu  ucccgau     acc  acu uu   cc cugg  g
   -aau     cg  g                g   --    -u       ----a   ua   u  uuu  -    ug
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000346.2: 18369999-18370141 [-]
intergenic
Database links

Mature sequence ptc-miR172g-5p

Accession MIMAT0022905
Sequence

13 -  

ggagcaucaucaagauucaca

 - 33

Get sequence
Evidence experimental; miRNAseq [4]

Mature sequence ptc-miR172g-3p

Accession MIMAT0001999
Previous IDsptc-miR172g
Sequence

114 -  

ggaaucuugaugaugcugcag

 - 134

Get sequence
Evidence experimental; cloned [1], miRNAseq [4]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).
4
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).