miRBase entry: rno-mir-374

Stem-loop rno-mir-374


Accession
MI0003552
Description
Rattus norvegicus rno-mir-374 precursor miRNA
Gene family
MIPF0000288; mir-374

Literature search
9 open access papers mention rno-mir-374
(17 sentences)

Sequence

41073 reads, 68 reads per million, 488 experiments
cucggauggAUAUAAUACAACCUGCUAAGUGuucuagcaCUUAGCACGUUGUAUUAUUAUUguccgag
(((((((((..((((((((((.((((((((((....)))))))))).))))))))))..)))))))))

Structure
         AU          C          u 
cucggaugg  AUAAUACAAC UGCUAAGUGu c
|||||||||  |||||||||| ||||||||||  
gagccugUU  UAUUAUGUUG ACGAUUCacg u
         AU          C          a 


Annotation confidence High
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Genome context
chrX: 74443648-74443715 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-374
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-374-5p

Accession MIMAT0003208
Description Rattus norvegicus rno-miR-374-5p mature miRNA
Sequence 10 - AUAUAAUACAACCUGCUAAGUG - 31
Evidence experimental
cloned [1-3], Northern [2], SOLiD [4]

Mature rno-miR-374-3p

Accession MIMAT0017223
Description Rattus norvegicus rno-miR-374-3p mature miRNA
Sequence 40 - CUUAGCACGUUGUAUUAUUAUU - 61
Evidence experimental
SOLiD [4]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  4. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267