miRBase entry: bta-mir-200a

Stem-loop bta-mir-200a


Accession
MI0005037
Description
Bos taurus bta-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
20 open access papers mention bta-mir-200a
(55 sentences)

Sequence

46601 reads, 1139 reads per million, 77 experiments
gggccucuguggacaucuuaccggacagugcuggauuucucggcucgacucUAACACUGUCUGGUAACGAUGUUcaaaggugaccc
((((.(((.(((((((((((((((((((((.((((....(((...))).)))).))))))))))))).)))))))).))).).)))

Structure
   - c   g        -             c    uuuc   g 
ggg c ucu uggacauc uuaccggacagug ugga    ucg  
||| | ||| |||||||| ||||||||||||| ||||    ||| c
ccc g gga acUUGUAG AAUGGUCUGUCAC AUcu    agc  
   a u   a        C             A    ---c   u 


Annotation confidence High
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Genome context
chr16: 52694578-52694663 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-200a

Accession MIMAT0003822
Description Bos taurus bta-miR-200a mature miRNA
Sequence 52 - UAACACUGUCUGGUAACGAUGUU - 74
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43