Stem-loop cin-mir-126

Accession

MI0007166

Description

Ciona intestinalis cin-mir-126 precursor miRNA

Gene family

MIPF0000115; mir-126

Literature search

2 open access papers mention cin-mir-126
(7 sentences)

Sequence

160 reads, 69 reads per million, 2 experiments

uuucgaugcugCCUUGUUACCUACGGUACCagguagaaaguaugucaucUCGUACCGUGAGUAAUAAAGCauucucgggag
((((((...(((.(((((((.((((((((.((((.((.......)))))).)))))))).))))))).)))...)))))).

Structure

-      ugc   C       C        C    a  aa 
 uuucga   ugC UUGUUAC UACGGUAC aggu ga  g
 ||||||   ||| ||||||| |||||||| |||| ||  u
 agggcu   aCG AAUAAUG GUGCCAUG Ucua cu  a
g      cuu   A       A        C    -  gu 

Annotation confidence Not enough data

Genome context

1q: 1582551-1582631 [+]

Mature cin-miR-126-5p

• Accession: MIMAT0015258
• Description: Ciona intestinalis cin-miR-126-5p mature miRNA
• Sequence: 12 - CCUUGUUACCUACGGUACC - 30
• Evidence: experimental ; Illumina [3]

Mature cin-miR-126-3p

• Accession: MIMAT0006101
• Description: Ciona intestinalis cin-miR-126-3p mature miRNA
• Sequence: 50 - UCGUACCGUGAGUAAUAAAGC - 70
• Evidence: experimental ; Northern [1], Illumina [3]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39


3. PubMed ID: 18047675
   Computational prediction and experimental validation of Ciona intestinalis microRNA genes
   Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T
   BMC Genomics (2007) 8:445