miRBase entry: bta-mir-129-1

Stem-loop bta-mir-129-1


Accession
MI0009728
Description
Bos taurus bta-mir-129-1 precursor miRNA
Gene family
MIPF0000073; mir-129

Literature search
5 open access papers mention bta-mir-129-1
(13 sentences)

Sequence

1308 reads, 67 reads per million, 58 experiments
ggauCUUUUUGCGGUCUGGGCUUGCUguuccucucuacaguagucaggaagcccuuaccccaaaaaguaucu
(((((((((((.(((..((((((.(((..(..((....))..).))).))))))..))).))))))).))))

Structure
    -       C   CU      G   uu cu  c 
ggau CUUUUUG GGU  GGGCUU CUg  c  cu u
|||| ||||||| |||  |||||| |||  |  ||  
ucua gaaaaac cca  cccgaa gac  g  ga a
    u       c   uu      g   -u au  c 


Annotation confidence High
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Genome context
chr4: 93534084-93534155 [+]

Database links

Mature bta-miR-129

Accession MIMAT0009220
Description Bos taurus bta-miR-129 mature miRNA
Sequence 5 - CUUUUUGCGGUCUGGGCUUGCU - 26
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125