miRBase entry: bta-mir-429

Stem-loop bta-mir-429


Accession
MI0009829
Description
Bos taurus bta-mir-429 precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
6 open access papers mention bta-mir-429
(9 sentences)

Sequence

44850 reads, 551 reads per million, 75 experiments
agccugccgaugggcgucuuaccagacacgguuagaucugguccuucugucUAAUACUGUCUGGUAAUGCCGUccauccccggc
.(((.(..((((((((.(((((((((((..(((((((..((....)).)))))))..)))))))))).).))))))))..))))

Structure
a   u cc        u -          cg       cu  u 
 gcc g  gaugggcg c uuaccagaca  guuagau  gg c
 ||| |  |||||||| | ||||||||||  |||||||  ||  
 cgg c  cuaccUGC G AAUGGUCUGU  UAAUcug  cu c
-   - cc        C U          CA       -u  u 


Annotation confidence Not enough data
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Genome context
chr16: 52693343-52693426 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-429
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-429

Accession MIMAT0009315
Description Bos taurus bta-miR-429 mature miRNA
Sequence 52 - UAAUACUGUCUGGUAAUGCCGU - 73
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125