miRBase entry: bta-mir-181b-1

Stem-loop bta-mir-181b-1


Accession
MI0010485
Description
Bos taurus bta-mir-181b-1 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
23 open access papers mention bta-mir-181b-1
(61 sentences)

Sequence

37648 reads, 463 reads per million, 76 experiments
cuugggcagagguucuuucuuaaaaggucacaaucAACAUUCAUUGCUGUCGGUGGGUUgaacuguguggacaagcucacugaacaaugagugcaacuguggccccgcau
.(((((.((((...)))))))))..(((((((.....(((((((((...((((((((((....(((....))))))))))))).)))))))))....)))))))......

Structure
cuugggcagagguucuuucuuaaaa       aucAA         CUG          gaac   g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUU    ugu u
                         |||||||     |||||||||   ||||||||||    |||  
                         ccggugu     gugaguaac   agucacucga    aca g
-------------------uacgcc       -caac         --a          ----   g 


Annotation confidence Not enough data
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Genome context
chr16: 79940310-79940419 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-181b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-181b

Accession MIMAT0003793
Description Bos taurus bta-miR-181b mature miRNA
Sequence 36 - AACAUUCAUUGCUGUCGGUGGGUU - 59
Evidence experimental
cloned [1,3]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125