Stem-loop bta-mir-181b-1

Accession

MI0010485

Description

Bos taurus bta-mir-181b-1 precursor miRNA

Literature search

23 open access papers mention bta-mir-181b-1
(61 sentences)

Sequence

37648 reads, 385 reads per million, 76 experiments

cuugggcagagguucuuucuuaaaaggucacaaucAACAUUCAUUGCUGUCGGUGGGUUgaacuguguggacaagcucacugaacaaugagugcaacuguggccccgcau
.(((((.((((...)))))))))..(((((((.....(((((((((...((((((((((....(((....))))))))))))).)))))))))....)))))))......

Structure

cuugggcagagguucuuucuuaaaa       aucAA         CUG          gaac   g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUU    ugu u
                         |||||||     |||||||||   ||||||||||    |||  
                         ccggugu     gugaguaac   agucacucga    aca g
-------------------uacgcc       -caac         --a          ----   g 

Annotation confidence Not enough data

Genome context

chr16: 79940310-79940419 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-181b-1

Mature bta-miR-181b

• Accession: MIMAT0003793
• Description: Bos taurus bta-miR-181b mature miRNA
• Sequence: 36 - AACAUUCAUUGCUGUCGGUGGGUU - 59
• Evidence: experimental ; cloned [1,3]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125