Stem-loop sequence dre-mir-107b

Accession

MI0010843 (change log)

Description

Danio rerio miR-107b stem-loop

Gene family

MIPF0000024; mir-103

Literature search

5 open access papers mention dre-mir-107b
(11 sentences)

Stem-loop

   --    gc   u   --    u  c           c   -ua    
5'   ucug  cac cug  ggcu cu uacaguguugc uug   gcc 
     ||||  ||| |||  |||| || ||||||||||| |||   || u
3'   agac  gug gac  ucgg ga auguuacgacg aac   ugg 
   ca    au   c   uu    -  c           -   uag    

Deep sequencing

27054 reads, 991 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr17: 23573130-23573215 [+]	sense OTTDART00000028572 ; pank1a-001; intron 5 ENSDART00000146787 ; pank1a-001; intron 5 ENSDART00000127583 ; pank1a-202; intron 5 ENSDART00000104724 ; pank1a-201; intron 5
KZ114956.1: 174798-174883 [+]	sense OTTDART00000028572 ; pank1a-001; intron 5 ENSDART00000146787 ; pank1a-001; intron 5 ENSDART00000127583 ; pank1a-202; intron 5 ENSDART00000104724 ; pank1a-201; intron 5
KZ115525.1: 591133-591218 [+]	sense OTTDART00000028572 ; pank1a-001; intron 5 ENSDART00000146787 ; pank1a-001; intron 5 ENSDART00000127583 ; pank1a-202; intron 5 ENSDART00000104724 ; pank1a-201; intron 5

Database links

• EntrezGene:mir107b
• EntrezGene:mir107b
• RNAcentral:URS000075A051_7955
• miRBase Tracker:MI0010843

Mature sequence dre-miR-107b

• Accession: MIMAT0011301
• Sequence: 51 - agcagcauuguacagggcuuu - 71
• Deep sequencing: 27053 reads, 11 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000075DBE9_7955
• Predicted targets:
  • TargetScanFish:dre-miR-107b

References

1. PMID:19397817 "Parallel DNA pyrosequencing unveils new zebrafish microRNAs" Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA BMC Genomics. 10:195(2009).