Stem-loop sequence dps-mir-2520

Accession

MI0011653 (change log)

Description

Drosophila pseudoobscura miR-2520 stem-loop

Stem-loop

   -  gagu    uucaagaacg   c    u           -c  -      c     aau 
5'  gg    ugau          gau guag acugaucgaga  gc uugcua uggag   u
    ||    ||||          ||| |||| |||||||||||  || |||||| |||||    
3'  cc    gcua          cua cguc ugauuagcuuu  cg aacgau accuu   c
   a  auac    -cgaaaaaaa   a    u           cc  c      a     cag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (dpse_r2.26_FB2012_01): XL_group1e: 8362599-8362718 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dps-mir-2520

• dps-mir-2541: XL_group1e: 8367679-8367786 [-]
• dps-mir-2540: XL_group1e: 8367333-8367441 [-]
• dps-mir-2523: XL_group1e: 8366995-8367108 [-]
• dps-mir-2539: XL_group1e: 8366678-8366788 [-]
• dps-mir-2522a: XL_group1e: 8365900-8366011 [-]
• dps-mir-2522b: XL_group1e: 8363413-8363514 [-]
• dps-mir-2538: XL_group1e: 8363244-8363359 [-]
• dps-mir-2521: XL_group1e: 8362756-8362842 [-]
• dps-mir-2520: XL_group1e: 8362599-8362718 [-]
• dps-mir-2537: XL_group1e: 8362508-8362587 [-]
• dps-mir-2536: XL_group1e: 8362342-8362452 [-]

Database links

• miRBase Tracker:MI0011653

Mature sequence dps-miR-2520

• Accession: MIMAT0012308
• Sequence: 68 - aauagcaacgcccuuucgauuagu - 91
• Evidence: experimental; Illumina [1]

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).