Stem-loop sequence dps-mir-2543b-1

Accession

MI0011686 (change log)

Description

Drosophila pseudoobscura miR-2543b-1 stem-loop

Gene family

MIPF0000856; mir-2543

Stem-loop

   -  ug -cag  ag      -     -------ua      g         u    u  aau 
5'  cc  c    ag  ggcuuu ugguu         uccuau ugcuguggc uaug ac   u
    ||  |    ||  |||||| |||||         |||||| ||||||||| |||| ||   c
3'  gg  g    uc  ccgaaa accga         aggaua gcggcaccg auac ug   g
   a  gu ccua  aa      c     uuacuaacg      g         u    -  aaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (dpse_r2.26_FB2012_01): XL_group1e: 8380575-8380690 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dps-mir-2543b-1

• dps-mir-2543b-1: XL_group1e: 8380575-8380690 [-]
• dps-mir-2517-3: XL_group1e: 8380430-8380532 [-]
• dps-mir-2544: XL_group1e: 8378925-8379029 [-]
• dps-mir-2542-3: XL_group1e: 8378579-8378663 [-]
• dps-mir-2543b-2: XL_group1e: 8378173-8378288 [-]
• dps-mir-2517-2: XL_group1e: 8378028-8378132 [-]
• dps-mir-2524: XL_group1e: 8377507-8377599 [-]
• dps-mir-2542-2: XL_group1e: 8376961-8377045 [-]
• dps-mir-2524: XL_group1e: 8376659-8376751 [-]
• dps-mir-2543a-2: XL_group1e: 8373978-8374093 [-]
• dps-mir-2542-1: XL_group1e: 8373614-8373698 [-]

Database links

• miRBase Tracker:MI0011686

Mature sequence dps-miR-2543b-5p

• Accession: MIMAT0012346
• Previous IDs: dps-miR-2543b*
• Sequence: 25 - auccuaugugcuguggcuuaug - 46
• Evidence: experimental; Illumina [1]

Mature sequence dps-miR-2543b-3p

• Accession: MIMAT0012347
• Previous IDs: dps-miR-2543b
• Sequence: 63 - uaugccacggcggauaggagca - 84
• Evidence: experimental; Illumina [1]

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).