Stem-loop dps-mir-2543b-1

Accession

MI0011686

Description

Drosophila pseudoobscura dps-mir-2543b-1 precursor miRNA

Sequence

ccugccagagagggcuuuugguuuAUCCUAUGUGCUGUGGCUUAUGuacaauucgaaagucaUAUGCCACGGCGGAUAGGAGCAaucauuagccacaaagccaacuauccguggga
(((((...((..(((((((((((..((((((.(((((((((.((((.((.........)))))).))))))))).)))))).........))))).))))))..))....))))).

Structure

-     -cag  ag      -     -------uA      G         U    u  aau 
 ccugc    ag  ggcuuu ugguu         UCCUAU UGCUGUGGC UAUG ac   u
 |||||    ||  |||||| |||||         |||||| ||||||||| |||| ||   c
 gggug    uc  ccgaaa accga         AGGAUA GCGGCACCG AUac ug   g
a     ccua  aa      c     uuacuaACG      G         U    -  aaa 

Annotation confidence Not enough data

Genome context

XL_group1e: 8380575-8380690 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from dps-mir-2543b-1

Mature dps-miR-2543b-5p

• Accession: MIMAT0012346
• Description: Drosophila pseudoobscura dps-miR-2543b-5p mature miRNA
• Sequence: 25 - AUCCUAUGUGCUGUGGCUUAUG - 46
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2543b-3p

• Accession: MIMAT0012347
• Description: Drosophila pseudoobscura dps-miR-2543b-3p mature miRNA
• Sequence: 63 - UAUGCCACGGCGGAUAGGAGCA - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9