Stem-loop ssc-mir-450b

Accession

MI0013140

Description

Sus scrofa ssc-mir-450b precursor miRNA

Literature search

5 open access papers mention ssc-mir-450b
(7 sentences)

Sequence

604 reads, 134 reads per million, 12 experiments

aaaauuauUUUUGCAAUAUGUUCCUGAAUAuguaauauaaguauaUUGGGAACAUUUUGCAUCCAUaguuuuguaucgau
((((((((...(((((.((((((((((((((.........)))).)))))))))).)))))...))))))))........

Structure

--------        UUU     U          -    gua 
        aaaauuau   UGCAA AUGUUCCUGA AUAu   a
        ||||||||   ||||| |||||||||| ||||   u
        uuuugaUA   ACGUU UACAAGGGUU uaug   a
uagcuaug        CCU     U          a    aau 

Annotation confidence Not enough data

Genome context

chrUScaf3177: 4358-4437 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ssc-mir-450b

Mature ssc-miR-450b-5p

• Accession: MIMAT0013927
• Description: Sus scrofa ssc-miR-450b-5p mature miRNA
• Sequence: 9 - UUUUGCAAUAUGUUCCUGAAUA - 30
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-450b-3p

• Accession: MIMAT0017380
• Description: Sus scrofa ssc-miR-450b-3p mature miRNA
• Sequence: 46 - UUGGGAACAUUUUGCAUCCAU - 66
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328